Sürdürülebilir Kalkınma Amaçları
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- MakaleYalnız künye2024Scopus SJRQ2Insight into novel inhibitors from Sterculia urens against Cholera via pharmacoinformatics and molecular dynamics simulation approaches
Rahman, M. Oliur; Ahmed, Sheikh Sunzid; Alqahtani, Ali S.; Cakilcioğlu, Uğur; Akbar, Mohammad Ahsanul
The underdeveloped countries with large populations are facing a grave global threat in the form of cholera. Vibrio cholerae, the etiologic agent of Cholera has drawn attention recently due to antimicrobial resistance and resulting outbreaks that necessitates establishment of novel medications to counteract virulence and viability of the pathogen. Sterculia urens Roxb. (Malvaceae) is an ethnomedicinally important tree, which harbors a good number of bioactive phytocompounds. In the present study, 53 phytocompounds of S. urens were screened against the promising target ToxT of V. cholerae employing structure-based drug design approach that revealed three lead compounds, viz., 4,4,5,8-Tetramethylchroman-2-ol (−8.2 kcal/mol), Beta-Bisabolol (−8.2 kcal/mol) and Ledol (−8.7 kcal/mol) with satisfactory ADMET properties. Molecular dynamics simulation for 150 ns unveiled notable compactness and structural stability for the lead compounds considering RMSD, RMSF, Rg, MolSA, PSA and protein-ligand contacts parameters. Molecular mechanics-based MM/GBSA binding energy calculation revealed Beta-Bisabolol (−66.74 kcal/mol) to have better scores than 4,4,5,8-Tetramethylchroman-2-ol (−47.42 kcal/mol) and Ledol (−65.79 kcal/mol). Enzymes were mostly found as drug target class, and Nabilone was found as a structurally similar analog for 4,4,5,8-Tetramethylchroman-2-ol. These discoveries could aid in revealing new antibacterial medications targeting ToxT to combat Cholera. Communicated by Ramaswamy H. Sarma.
AtıfScopus8OpenAlex8
İncele - MakaleAçık Erişim2019Scopus SJRQ4MICROMORPHOLOGICAL AND ANATOMICAL INVESTIGATION ON SIX SPECIES OF ONOSMA L. (BORAGINACEAE) FROM TURKEY
Selvi, Selami; Polat, Ridvan; Babacan, Ebru Yuce; Rahman, M. Oliur; Çakilcioglu, Ugur
Micromorphology and anatomy of six Onosma L. species, viz. O. argentata Hub.Mor., O. neglecta Riedl, O. proballanthera Rech. f, O. rechingeri Riedl, O. sericea Willd. and O. stenoloba Hausskn. ex Riedl from Turky were investigated. Stem anatomy revealed that cuticle layer ranged from 0.6 mu m in O. argentata to 1.7 mu m in O. proballanthera. Parenchymatous cells of O. neglecta and O. stenoloba possessed more intense starch than the other species studied. In leaf anatomy, the longest palisade parenchyma was found in O. neglecta, while the smallest was noted in O. argentata. Mesophyll structure of O. argentata, O. sericea and O. rechingeri was equifacial (isobilateral), while O. neglecta, O. proballanthera and O. stenoloba presented bifacial (dorsiventral) structure. Rugose nutlet ornamentation was observed in O. argentata, O. neglecta and O. sericea, whereas reticulate type was found in O. proballanthera, O. rechingeri and O. stenoloba. Onosma stenoloba could easily be distinguished from other species by its aesterotrichous indumentum, and in contrary, other species possessed haplotrichous type of indumentum. Micromorphological features of nutlet surface, anatomical features of epidermal surface (trichomes and stomata), and lamina mesophyll structure (dorsiventral and isobilateral) could be useful in solving taxonomic problem of the genus.
AtıfWoS7OpenAlex12İncele - MakaleAçık Erişim2018Scopus SJRQ3Traditional honey production and bee flora of Espiye, Turkey
Karaköse, Mustafa; Polat, Ridvan; Rahman, M. Oliur; Çakilcioglu, Ugur
This paper presents potential honey bee plants in Espiye (Giresun) which can be considered as a guide for beekeepers and researchers. A total of 149 taxa belonging to 125 genara and 48 families were recorded as pollen and nectary sources for honey bee colonies at Espiye (Giresun) region. Among the recorded taxa 58 were Phanerophytes, 57 taxa Hemicryptophytes, 19 taxa Therophytes, 13 taxa Cryptophytes and 2 taxa Chamaephytes. Updated nomenclature along with the families, local names, life form, flowering period and ecological status have been furnished under 94 herbs, 28 shrubs and 27 trees.
AtıfScopus10WoS13OpenAlex18İncele