Genetic variation and molecular relationships taxa of conringia heist. EX FABR. (BRASSICACEAE) Based on rapd markers in Turkey

MakaleAçık ErişimScopus SJRQ3

Özet

In this study, genetic variation and phylogenetic analysis of 13 populations of 6 species belonging to Conringia genus spreading in Turkey were performed using RAPD markers. Genomic DNA isolation from the leaves of the Conringia plant samples was performed via using a commercial kit. Seven RAPD primers were used to identify the genetic diversity between the populations. Polymerase Chain Reaction (PCR) was performed using DNA samples and primers. PCR products were resolved using agarose gel electrophoresis and visualized under UV light. All gel images were analyzed, and the absence and presence of polymorphic bands were scored. The total of 34 DNA bands were detected by seven RAPD primers. PAUP 4.0b10 analysis program was used to calculate phylogenetic tree and genetic distances between the species. The phylogenetic tree was obtained using the UPGMA algorithm and it was composed of two clades. According to the PAUP analysis, the species having the closest distance between each other are C. planisiliqua (Ankara-AyaG) and C. planisiliqua (Ankara-Nallihan) with the value of 0.000 and those having the longest distance are C. grandiflora (Akseki Cukurkoy) and C. orientalis (Elazig-Baskil) with the value of 0.6000. The results suggest that the RAPD markers are useful tools to demonstrate the genetic relationships between populations of the Conringia species.

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RDL Kalıcı Bağlantı (PID)
https://rdlopen.rawdatalibrary.net/r/munzur/3501Resmi atıflarda kullanılan kalıcı adres
DOI
https://doi.org/10.2298/gensr2001107sYayıncı resmi DOI adresi
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Atıflar
Scopus
6
WoS
3
OpenAlex
6
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Tam Kayıt
AlanDeğerDil
dc.contributor.authorSevgndgk, Emre
dc.contributor.authorPaksoy, Mehmet Yavuz
dc.contributor.authorAydoğan, Melike
dc.contributor.authorTopseçer, Feyzanur
dc.date.accessioned2026-10-28T14:56:43.091341353Z
dc.date.available2026-10-28T14:56:43.091341353Z
dc.date.issued2020
dc.description.abstractIn this study, genetic variation and phylogenetic analysis of 13 populations of 6 species belonging to Conringia genus spreading in Turkey were performed using RAPD markers. Genomic DNA isolation from the leaves of the Conringia plant samples was performed via using a commercial kit. Seven RAPD primers were used to identify the genetic diversity between the populations. Polymerase Chain Reaction (PCR) was performed using DNA samples and primers. PCR products were resolved using agarose gel electrophoresis and visualized under UV light. All gel images were analyzed, and the absence and presence of polymorphic bands were scored. The total of 34 DNA bands were detected by seven RAPD primers. PAUP 4.0b10 analysis program was used to calculate phylogenetic tree and genetic distances between the species. The phylogenetic tree was obtained using the UPGMA algorithm and it was composed of two clades. According to the PAUP analysis, the species having the closest distance between each other are C. planisiliqua (Ankara-AyaG) and C. planisiliqua (Ankara-Nallihan) with the value of 0.000 and those having the longest distance are C. grandiflora (Akseki Cukurkoy) and C. orientalis (Elazig-Baskil) with the value of 0.6000. The results suggest that the RAPD markers are useful tools to demonstrate the genetic relationships between populations of the Conringia species.
dc.identifier.doi10.2298/gensr2001107s
dc.identifier.eissn1820-6069
dc.identifier.endpage114
dc.identifier.issn0534-0012
dc.identifier.issue1
dc.identifier.scopus2-s2.0-85087124158
dc.identifier.startpage107
dc.identifier.urihttps://rdlopen.rawdatalibrary.net/r/munzur/3501
dc.identifier.volume52
dc.identifier.wosWOS:000535652400009
dc.language.isoen
dc.publisherSerbian Genetics Society
dc.relation.ispartofGenetika
dc.rightsinfo:eu-repo/semantics/openAccess
dc.subjectConringia
dc.subjectGenetic variation
dc.subjectPhylogenetic
dc.subjectRAPD-PCR
dc.subjectTurkey
dc.subject.classificationAgronomy
dc.subject.classificationGenetics & Heredity
dc.subject.classificationAgriculture
dc.subject.otherPHYLOGENETIC-RELATIONSHIPS
dc.subject.otherDIVERSITY
dc.subject.otherL.
dc.subject.otherPOPULATIONS
dc.subject.otherVARIETIES
dc.titleGenetic variation and molecular relationships taxa of conringia heist. EX FABR. (BRASSICACEAE) Based on rapd markers in Turkey
dc.typeArticle
rdl.citation.openalex6
rdl.citation.scopus6
rdl.citation.wos3
rdl.oa.statusgold
rdl.oa.urlhttp://www.doiserbia.nb.rs/ft.aspx?id=0534-00122001107S
rdl.scopus.quartileQ3
rdl.source.indexSCOPUS
rdl.source.indexWOS
rdl.wos.indexScience Citation Index Expanded (SCI-EXPANDED)