Sürdürülebilir Kalkınma Amaçları

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• BildiriAçık Erişim2021/r/munzur/2936
  Deep Neural Network Trained on Surface ECG Improves Diagnostic Accuracy of Prior Myocardial Infarction over Q Wave Analysis

  Yildirim, Ozal; Baloglu, Ulas B; Talo, Muhammed; Ganesan, Prasanth; Tung, Jagteshwar S; Kang, Guson; Tooley, James; Alhusseini, Mahmood I.; Baykaner, Tina; Wang, Paul J.

  Clinical screening of myocardial infarction is important for preventative treatment and risk stratification in cardiology practice, however current detection by electrocardiogram Q-wave analysis provides only modest accuracy for assessing prior cardiac events. We set out to evaluate the ability of a deep neural network trained on the electrocardiogram to identify patients with clinical history of myocardial infarction. We assessed 608 patients at two academic centers with adjudicated history of myocardial infarction. Surface electrocardiograms were used to train a neural network-based model that classifies patients with and without a history of infarction. Endpoints were assessed by clinical record review and accuracy of the model was compared against the manual assessment of pathologic Q waves. The neural network outperformed the accuracy of pathologic Q waves (62%). In training, the model accuracy converged to >98%. Validation was performed by cross-validation (k=5) with validation accuracy 71 ± 5%. Receiver-operator characteristics analysis resulted in a c-statistic of 0.730. Deep learning of a 12-lead ECG can identify features of prior myocardial injury more accurately than clinical Q-wave analysis and may serve as a valuable clinical screening tool.

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  AtıfScopus3·OpenAlex3

  İncele
• MakaleYalnız künye2020Scopus SJRQ1/r/munzur/3825
  A deep convolutional neural network model for automated identification of abnormal EEG signals

  Yıldırım, Özal; Baloglu, Ulas Baran; Acharya, U. Rajendra

  Electroencephalogram (EEG) is widely used to monitor the brain activities. The manual examination of these signals by experts is strenuous and time consuming. Hence, machine learning techniques can be used to improve the accuracy of detection. Nowadays, deep learning methodologies have been used in medical field to diagnose the health conditions precisely and aid the clinicians. In this study, a new deep one-dimensional convolutional neural network (1D CNN) model is proposed for the automatic recognition of normal and abnormal EEG signals. The proposed model is a complete end-to-end structure which classifies the EEG signals without requiring any feature extraction. In this study, we have used the EEG signals from temporal to occipital (T5–O1) single channel obtained from Temple University Hospital EEG Abnormal Corpus (v2.0.0) EEG dataset to develop the 1D CNN model. Our developed model has yielded the classification error rate of 20.66% in classifying the normal and abnormal EEG signals.

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  AtıfScopus164·OpenAlex211

  İncele
• MakaleAçık Erişim2020Scopus SJRQ1/r/munzur/3545
  Automated detection of COVID-19 cases using deep neural networks with X-ray images

  Ozturk, Tulin; Talo, Muhammed; Yildirim, Eylul Azra; Baloglu, Ulas Baran; Yildirim, Ozal; Rajendra Acharya, U.

  The novel coronavirus 2019 (COVID-2019), which first appeared in Wuhan city of China in December 2019, spread rapidly around the world and became a pandemic. It has caused a devastating effect on both daily lives, public health, and the global economy. It is critical to detect the positive cases as early as possible so as to prevent the further spread of this epidemic and to quickly treat affected patients. The need for auxiliary diagnostic tools has increased as there are no accurate automated toolkits available. Recent findings obtained using radiology imaging techniques suggest that such images contain salient information about the COVID-19 virus. Application of advanced artificial intelligence (AI) techniques coupled with radiological imaging can be helpful for the accurate detection of this disease, and can also be assistive to overcome the problem of a lack of specialized physicians in remote villages. In this study, a new model for automatic COVID-19 detection using raw chest X-ray images is presented. The proposed model is developed to provide accurate diagnostics for binary classification (COVID vs. No-Findings) and multi-class classification (COVID vs. No-Findings vs. Pneumonia). Our model produced a classification accuracy of 98.08% for binary classes and 87.02% for multi-class cases. The DarkNet model was used in our study as a classifier for the you only look once (YOLO) real time object detection system. We implemented 17 convolutional layers and introduced different filtering on each layer. Our model (available at (https://github.com/muhammedtalo/COVID-19)) can be employed to assist radiologists in validating their initial screening, and can also be employed via cloud to immediately screen patients.

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  AtıfScopus2286·OpenAlex2595

  İncele
• Derleme MakaleYayıncıda açık erişim2020Scopus SJRQ1/r/munzur/3307
  Application of deep learning techniques for heartbeats detection using ECG signals-analysis and review

  Murat, Fatma; Yildirim, Ozal; Talo, Muhammed; Baloglu, Ulas Baran; Demir, Yakup; Acharya, U. Rajendra

  Deep learning models have become a popular mode to classify electrocardiogram (ECG) data. Investigators have used a variety of deep learning techniques for this application. Herein, a detailed examination of deep learning methods for ECG arrhythmia detection is provided. Approaches used by investigators are examined, and their contributions to the field are detailed. For this purpose, journal papers have been surveyed according to the methods used. In addition, various deep learning models and experimental studies are described and discussed. A five-class ECG dataset containing 100,022 beats was then utilized for further analysis of deep learning techniques. The constructed models were examined with this dataset, and results are presented. This study therefore provides information concerning deep learning approaches used for arrhythmia classification, and suggestions for further research in this area.

  AtıfScopus318·OpenAlex328

  İncele
• MakaleYalnız künye2019Scopus SJRQ4/r/munzur/4542
  CONVOLUTIONAL LONG-SHORT TERM MEMORY NETWORKS MODEL FOR LONG DURATION EEG SIGNAL CLASSIFICATION

  Baloglu, Ulas Baran; Yildirim, Ozal

  Background and objective: Deep learning structures have recently achieved remarkable success in the field of machine learning. Convolutional neural networks (CNN) in image processing and long-short term memory (LSTM) in the time-series analysis are commonly used deep learning algorithms. Healthcare applications of deep learning algorithms provide important contributions for computer-aided diagnosis research. In this study, convolutional long-short term memory (CLSTM) network was used for automatic classification of EEG signals and automatic seizure detection. Methods: A new nine-layer deep network model consisting of convolutional and LSTM layers was designed. The signals processed in the convolutional layers were given as an input to the LSTM network whose outputs were processed in densely connected neural network layers. The EEG data is appropriate for a model having 1-D convolution layers. A bidirectional model was employed in the LSTM layer. Results: Bonn University EEG database with five different datasets was used for experimental studies. In this database, each dataset contains 23.6 s duration 100 single channel EEG segments which consist of 4097 dimensional samples (173.61 Hz). Eight two-class and three three-class clinical scenarios were examined. When the experimental results were evaluated, it was seen that the proposed model had high accuracy on both binary and ternary classification tasks. Conclusions: The proposed end-to-end learning structure showed a good performance without using any hand-crafted feature extraction or shallow classifiers to detect the seizures. The model does not require filtering, and also automatically learns to filter the input as well. As a result, the proposed model can process long duration EEG signals without applying segmentation, and can detect epileptic seizures automatically by using the correlation of ictal and interictal signals of raw data.

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  AtıfWoS17·OpenAlex19

  İncele
• BildiriAçık Erişim2019/r/munzur/3972
  Person Recognition via Facial Expression Using ELM Classifier Based CNN Feature Maps

  Baloglu, Ulas Baran; Yildirim, Ozal; Uçar, AySegul

  Extreme learning machine (ELM) and deep learning methods are well-known with their efficiency, accuracy, and speed. In this study, we focus on the application of ELM to a deep learning structure for person recognition with facial expressions. For this purpose, a new convolutional neural network (CNN) model containing Kernel ELM classifiers was constructed. In this model, ELM was not used only as a fully connected layer replacement and energy function was employed to generate feature maps for the ELM. There are two advantages of the proposed model. First, it is fast and successful in face recognition studies. Second, it can drastically improve the performance of a partially-trained CNN model. Consequently, the proposed model is very suitable for CNN models, where the learning process requires a lot of time and computational power. The model is tested with the Grimace data set and experimental results are presented in details.

  AtıfOpenAlex3

  İncele
• MakaleYalnız künye2019Scopus SJRQ1/r/munzur/3831
  Classification of myocardial infarction with multi-lead ECG signals and deep CNN

  Baloglu, Ulas Baran; Talo, Muhammed; Yildirim, Ozal; Tan, Ru San; Acharya, U Rajendra

  Myocardial infarction (MI), commonly known as heart attack, causes irreversible damage to heart muscles and even leads to death. Rapid and accurate diagnosis of MI is critical to avoid death. Blood tests and electrocardiogram (ECG) signals are used to diagnose acute MI. However, for an increase in blood enzyme values, a certain time must pass after the attack. This time lag may delay MI diagnosis. Hence, ECG diagnosis is still very important. Manual ECG interpretation requires expertise and is prone to inter-observer variability. Therefore, computer aided diagnosis may be useful in automatic detection of MI on ECG. In this study, a deep learning model with an end-to-end structure on the standard 12-lead ECG signal for the diagnosis of MI is proposed. For this purpose, the most commonly used technique, convolutional neural network (CNN) is used. Our trained CNN model with the proposed architecture yielded impressive accuracy and sensitivity performance over 99.00% for MI diagnosis on all ECG lead signals. Thus, the proposed model has the potential to provide high performance on MI detection which can be used in wearable technologies and intensive care units.

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  AtıfScopus457·OpenAlex476

  İncele
• MakaleYalnız künye2019Scopus SJRQ1/r/munzur/3567
  A new approach for arrhythmia classification using deep coded features and LSTM networks

  Yildirim, Ozal; Baloglu, Ulas Baran; Tan, Ru-San; Ciaccio, Edward J.; Acharya, U. Rajendra

  Background and objective: For diagnosis of arrhythmic heart problems, electrocardiogram (ECG)signals should be recorded and monitored. The long-term signal records obtained are analyzed by expert cardiologists. Devices such as the Holter monitor have limited hardware capabilities. For improved diagnostic capacity, it would be helpful to detect arrhythmic signals automatically. In this study, a novel approach is presented as a candidate solution for these issues. Methods: A convolutional auto-encoder (CAE)based nonlinear compression structure is implemented to reduce the signal size of arrhythmic beats. Long-short term memory (LSTM)classifiers are employed to automatically recognize arrhythmias using ECG features, which are deeply coded with the CAE network. Results: Based upon the coded ECG signals, both storage requirement and classification time were considerably reduced. In experimental studies conducted with the MIT-BIH arrhythmia database, ECG signals were compressed by an average 0.70% percentage root mean square difference (PRD)rate, and an accuracy of over 99.0% was observed. Conclusions: One of the significant contributions of this study is that the proposed approach can significantly reduce time duration when using LSTM networks for data analysis. Thus, a novel and effective approach was proposed for both ECG signal compression, and their high-performance automatic recognition, with very low computational cost.

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  AtıfScopus377·OpenAlex388

  İncele
• MakaleYalnız künye2019Scopus SJRQ3/r/munzur/3512
  Application of deep transfer learning for automated brain abnormality classification using MR images

  Talo, Muhammed; Baloglu, Ulas Baran; Yıldırım, Özal; Rajendra Acharya, U.

  Magnetic resonance imaging (MRI) is the most common imaging technique used to detect abnormal brain tumors. Traditionally, MRI images are analyzed manually by radiologists to detect the abnormal conditions in the brain. Manual interpretation of huge volume of images is time consuming and difficult. Hence, computer-based detection helps in accurate and fast diagnosis. In this study, we proposed an approach that uses deep transfer learning to automatically classify normal and abnormal brain MR images. Convolutional neural network (CNN) based ResNet34 model is used as a deep learning model. We have used current deep learning techniques such as data augmentation, optimal learning rate finder and fine-tuning to train the model. The proposed model achieved 5-fold classification accuracy of 100% on 613 MR images. Our developed system is ready to test on huge database and can assist the radiologists in their daily screening of MR images.

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  AtıfScopus473·OpenAlex508

  İncele
• MakaleAçık Erişim2019Scopus SJRQ1/r/munzur/3421
  Convolutional neural networks for multi-class brain disease detection using MRI images

  Talo, Muhammed; Yildirim, Ozal; Baloglu, Ulas Baran; Aydin, Galip; Acharya, U Rajendra

  The brain disorders may cause loss of some critical functions such as thinking, speech, and movement. So, the early detection of brain diseases may help to get the timely best treatment. One of the conventional methods used to diagnose these disorders is the magnetic resonance imaging (MRI) technique. Manual diagnosis of brain abnormalities is time-consuming and difficult to perceive the minute changes in the MRI images, especially in the early stages of abnormalities. Proper selection of the features and classifiers to obtain the highest performance is a challenging task. Hence, deep learning models have been widely used for medical image analysis over the past few years. In this study, we have employed the AlexNet, Vgg-16, ResNet-18, ResNet-34, and ResNet-50 pre-trained models to automatically classify MR images in to normal, cerebrovascular, neoplastic, degenerative, and inflammatory diseases classes. We have also compared their classification performance with pre-trained models, which are the state-of-art architectures. We have obtained the best classification accuracy of 95.23% ± 0.6 with the ResNet-50 model among the five pre-trained models. Our model is ready to be tested with huge MRI images of brain abnormalities. The outcome of the model will also help the clinicians to validate their findings after manual reading of the MRI images.

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  AtıfScopus276·OpenAlex301

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